Matt Carson

COBRE Bioinformatics Core Administrator, Laboratory for Genomics and Bioinformatics

Sun Certified System Administrator

matt-carson@ouhsc.edu

(405)-271-2133 x47484 (phone)
(405)-271-1204 (fax)


 

Peer-reviewed Publications

  1. Munson RS Jr, Harrison A, Gillaspy A, Ray WC, Carson M, Armbruster D, Gipson J, Gipson M, Johnson L, Lewis L, Dyer DW, Bakaletz LO. Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates. Infect Immun. 2004 May;72(5):3002-10.
    PMID: 15102813
  2. Ajdic D, McShan WM, McLaughlin RE, Savic G, Chang J, Carson MB, Primeaux C, Tian R, Kenton S, Jia H, Lin S, Qian Y, Li S, Zhu H, Najar F, Lai H, White J, Roe BA, Ferretti JJ. Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14434-9. Epub 2002 Oct 23.
    PMID: 12397186
  3. Lewis, L.A., A.F. Gillaspy, R.E. McLaughlin, M. Gipson, T. Ducey, T. Ownbey, K. Hartman, C. Nydick, M. Carson, J. Vaughn, C. Thomson, L. Song, S. Lin, X. Yuan, F. Najar, M. Zhan, Q. Ren, H. Zhu, S. Qi, S.M. Kenton, H. Lai, J.D. White, S. Clifton, B.A. Roe and D.W. Dyer. The Complete Genome Sequence of Neisseria gonorrhoeae Strain FA1090. 2002. (submitted)
  4. A.F. Gillaspy, T.F. Ducey, J.Griffin, J.Gipson, M.Gipson, M. Carson and D.W. Dyer.
    SPACE walking: single primer amplification to expedite genome closure and large-insert clone sequencing.
    (in review)

Non-refereed publications and abstracts

  1. M. B. Carson, J. Orvis, A. Gillaspy, and D. W. Dyer. Sequal: A web-based, graphical representation of phrap quality scores for consensus sequence.
    Presented at the 3rd Annual TIGR/ASM Small Genomes Meeting, New Orleans, LA, 2003.
  2. M. B. Carson. Review of the DNA sequence viewer and annotation tool Artemis 4, BioMedNet's HMS Beagle, Issue 117, 2002-12-21.
  3. A. F. Gillaspy, L. Powelson, J. Gipson, M. Gipson, M. Carson, J. Orvis and D. W. Dyer. Genome sequencing of a non-toxigenic swine isolate of Pasteurella multocida.
    Presented at the USDA/NSF Conference, Washington D.C, 2004.
  4. J. Orvis, M. B. Carson, A. Gillaspy, and D. W. Dyer. blaSTOR: An Access database for automating blast storage and analysis.
    Presented at the 3rd Annual TIGR/ASM Small Genomes Meeting, New Orleans, LA, 2003.
  5. Gillaspy, A.F., J. Griffin, F. Najar, J. Hinkle, L.A. Lewis, R.E. McLaughlin, K. Hartman, C. Nydick, M. Gipson, B. Conway, J. Vaughn, C. Thomson, J. Gipson, L. Maddera, M. Carson, S. Kenton, H. Lai, B.A. Roe and D.W. Dyer. Genome sequencing and closure of the periodontal pathogen, Actinobacillus actinomycetemcomitans.
    Presented at the International Pasteurellaceae Society Conference, Banff, Canada, May 2002.
  6. Robert S. Munson, Jr., Lauren O. Bakaletz, Will Ray, Allison Gillaspy, Matt Carson, Linda Johnson, and David Dyer. Genomic sequencing of an otitis media isolate of nontypeable Haemophilus influenzae.
    Presented at the International Pasteurellaceae Society, Banff, Canada, May 2002.
  7. A. F. Gillaspy, J. Griffin, F. Najar, J. Hinkle, L.A. Lewis, R.E. McLaughlin, K. Hartman, C. Nydick, M. Gipson, B. Conway, J. Vaughn, C. Thompson, J. Gipson, L. Maddera, M. Carson, S. Kenton, H. Lai, B.A. Roe, and D.W. Dyer. Genome sequencing and closure of the periodontal pathogen, Actinobacillus actinomycetemcomitans.
    Presented at the 2nd Annual TIGR/ASM Small Genomes Meeting, Las Vegas, NV, 2002.
  8. L. A. Lewis, A. F. Gillaspy, R. F. McLaughlin, M. Gipson, T. Ducey, T. Ownbey, K. Hartman, C. Nydick, M. Carson, J. Vaughn, C. Thompson, L. Song, S. Lin, X. Yuan, F. Najar, M. Zhan, Q. Ren, H. Zhu, S. Qi, S. M. Kenton, H. Lai, J. D. White, S. Clifton, B. A. Roe, and D. W. Dyer. The Complete Genome Sequence of Neisseria gonorrhoeae Strain FA1090.
    Presented at the 1st Annual TIGR/ASM Small Genomes Meeting, Monterey, CA, January 2001.
  9. A. F. Gillaspy, F. Najar, J. Hinkle, L. A. Lewis, R. E. McLaughlin, K. Hartman, C. Nydick, M. Gipson, B. Conway, J. Vaughn, C. Thompson, J. Gipson, L. Maddera, M. Carson, S. Kenton, H. Lai, B. A. Roe, and D. W. Dyer. Genome Sequencing of the Periodontal Pathogen Actinobacillus actinomycetemcomitans.
    Presented at the 1st Annual TIGR/ASM Small Genomes Meeting, Monterey, CA, January 2001.

Acknowledgements

  1. Nathan Shankar, Arto S. Baghdayan, and Michael S. Gilmore. Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis. Nature, June 13, 2002, vol. 417, pgs. 746-750.